PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G20140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 224aa    MW: 23514.9 Da    PI: 6.9606
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G20140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.77.1e-5822117297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplk yl+k+re+eg
  OPUNC03G20140.1  22 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKHYLHKFREIEG 115
                      89******************************************************************************************** PP

            NF-YB  96 ek 97 
                      e+
  OPUNC03G20140.1 116 ER 117
                      97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.1E-5519139IPR009072Histone-fold
SuperFamilySSF471139.43E-4124130IPR009072Histone-fold
PfamPF008087.3E-282791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.5E-205573No hitNo description
PROSITE patternPS0068505874IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.5E-207492No hitNo description
PRINTSPR006151.5E-2093111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MPDSDNDSGG PSNAGGELSS PREQDRFLPI ANVSRIMKKA LPANAKISKD AKETVQECVS  60
EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFEDYV EPLKHYLHKF REIEGERAAA  120
STGGSSAGGA ASTTQQQTDM SRSANAGGYA GYGGPGAGPG GMMMMMGQPM YGSPPPQQQQ  180
QQQQQQQHHH MAMGGRGSFG HHPGGGAGAG GGSSSSGHGR QDRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4822112292Transcription factor HapC (Eurofung)
4g92_B5e-4822112292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2311250.0AC231125.2 Oryza minuta clone OM__Ba0231A01, complete sequence.
GenBankAC2330450.0AC233045.1 Oryza minuta clone OM__Ba0165A09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651500.17e-89PREDICTED: nuclear transcription factor Y subunit B-3-like
RefseqXP_015631006.18e-88PREDICTED: nuclear transcription factor Y subunit B-3
SwissprotO233108e-72NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A0E0KF061e-164A0A0E0KF06_ORYPU; Uncharacterized protein
STRINGMLOC_5897.11e-89(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-71nuclear factor Y, subunit B3